PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 8499722 (312 amino acids)

SeqID: 8499722 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 67466690: Ribose-phosphate pyrophosphokinase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>8499722
MHGDLKILTGTSNPALAKAICNHLGCQLTPALCETFSDGEIRIEIGDNVRGDDVFVVQAT
CSPVNYNLMQLCLMLDALKRASAGRVTAVVPYYGYARQDRKVSPRAPISAKLVADFLTTA
GTDRVVTVDLHAGQIQGFFNVPVDNLYAQPVILEYLRPYAGDIVIVSPDAGGVERARSFA
KKLNAGLAIIDKRRDRPNQASAMHVIGDVRDKIAIVVDDMIDTAGTMCAAGEVLLKNGAK
EVMACATHPVLSGPAIERLCNSTFSQVIVTDTVPLGDKLAACSKLKVLSVAGLLAKAIHN
IHTESSVSVLFV

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory