PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 8499887 (370 amino acids)

SeqID: 8499887 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15595489: agmatine deiminase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>8499887
MERTSPPLPPNFAPVRLPVRAPVCDGLHMPAEWSPHAGCWMAWPCPDPLLEDALDTVRTS
FAGVVRAIARFEPVTLLARPEDAEVAAALCGPGVQVVPAPITDAWMRDFGPTFVVDGAGG
VAGVDWMFNSWGHTYDEPTHDDDVAQLILSRLGMRRYAAPFILEGGSIHVDGQGTLMTTE
QCLLDPRRNAGMTKADFEELFAAYLGVRKVIWLGEGLEGDDTHGHVDIVSCFARPGVVLL
HRCDDPEDPNHAVYQDNLRRLQLATDADGKPLEIVTIDQPNRAEHGGKRMDLSYINFYVA
NGGIVMSAFGAPGGGADSQGALDRVAFETLRRVFPEREVVQVHSLDIFRGGGGIHCITQQ
QPVGRPLSPF

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory