PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 8500217 (393 amino acids)

SeqID: 8500217 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 16130827: phosphoglycerate kinase [Escherichia coli K12]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>8500217
MAVLKMTDLDLKGKRVLLREDLNVPLKDGKVTSDKRIRAALPSIEMALKAGARVLLVSHL
GRPTEGEFDPAFSLAPVAEHLSRALGFQVPLVRDYIDGIEVAEGQCVLCENVRFLKGEKK
DDEALGRKLAALCDIFVMDAFGAAHRAQASTHAAVRFAKVACAGPLLAAELDALSRALDA
PAKPMVGIIGGSKVSTKLTLLDTLSKKVDRLIVGGGIANNFIKAAGHEVGRSLYEPELVD
EAARLMAAARAAGGEIPVPVDVVVGPEFADSAPATVRKVSEVKPDEMILDIGPETAKLYR
DILMQAGTIVWNGPVGAFEVEQFGQGTKALCMAVADSPAFSLAGGGDTVAAIEKYGVVDR
ISYMSTGGGAFLEFLEGKTLPAVAVLEERSSKG

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory