PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 8500233 (386 amino acids)

SeqID: 8500233 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 462590: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>8500233
MNDYELRKFVAPEFVFGYGAAGLAGRHARNLGASRCLVVSDQGVAAAGHTDAVARTLRDE
GIACATFLGVSENPRDTEVMQGSEVFRAEGCDAIVAVGGGSPMDCAKGIGIVVANGGHIL
DYEGVDAIPKPMPPLVCVPTTAGSSADVSQFAIIRDTPRRVKIAIVSKANVPDVALVDPL
TTLTKPRELTAATGLDALTHAVEAYASNAHSPVTDMFALEAVRGIGSALFDVLDDLGNRD
ARARMALGSMNAGLAFSNAILGAVHALSHSLGGLLDLPHGECNALLLPFVVRRNYVAAPQ
RYRRVAEALGVADALAAPDDEVRDALFARLGAMRRRAGFDKGLAQYGVTRDQLAELARLA
LEDPCLSTNPVPLDARELEQLYAEAF

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory