PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 8500239 (464 amino acids)

SeqID: 8500239 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 67461804: Glutamyl-tRNA synthetase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>8500239
MTKVVTRFAPSPTGHLHIGGARTAIFNWLLARHFGGTFLLRIEDTDQERSLQEYTDSILA
SMRWLGLDWDGDLIYQSRRFDIYNGYIDRMLETGHAYWCECTPEEVEQMRETARERGLKP
KYDGRCRERGLGPGPGRVVRLKAPLTGRVVFEDVVKGTLAFDAAELDDMVLRRSDGTPTY
NMAVVVDDATMGVTHVLRGDDHVSNTPKQVLIYQALGLPLPIFGHVPMILGPDKKKLSKR
HGARAVIEYEQDGLLPQALVNYLVRLGWSFGDQEIFALQELVEKFTTDNLNSAPAAFDPD
KLQWLNAHYLRETPVDELARLAAPFVKAEGFDVAPERLATLVPLFRERASNLADLARVMR
FMLVDATALEHDPAAVAKALTAEGKAHVAALRGLLEQADPFDKAALEKVVHDYVEQGGLK
FKQVGPPLRVALAGSLGGPGLPEIMEVLGRAETLARLDRAAALA