PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 8500245 (491 amino acids)

SeqID: 8500245 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 584840: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>8500245
MSGRTIDTGMPGAAPTPPAATGATLRLRALDKAHVWHPFTQMRDWLAADPLVIGAAEGNR
LTDTDGVSYLDGVSSLWTNVHGHRHPRLDAAIRAQLDKVAHTTLLGLGSEPSIELAARLA
AIAPQGLTRVFYSDSGSTSVEVALKIAFQFHRQAPAHLGGDARRTRFLSLRNAYHGDTVG
AVALGGMALFHSIYAPLLFDTVKAESPYCYRCPFGRQAGSCERECITHMETLFARHGHEL
CAAVVEPLVQGAAGMLLQPPGWLRRVRELCDEHGVFLVADEVAVGFGKTGTLFACEQEGV
TPDFLCLAKGISGGYLPLAATLTTERVHDGFLARHEELRTFFHGHTYTGNPLACAAAIAS
LDVFEEERVMERLQPKIARLAARLDTLRDLPHVGDIRQRGVMTGIEMVRNRATKEAYDLA
LRVGHRVTLEARRRGVIIRPLGDVMVLMPPLSITDDEIDLLVGATGEAIRAVTERGATGG
LEGLPPMSGVA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory