PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 8500742 (569 amino acids)

SeqID: 8500742 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 46577191: Glutaminyl-tRNA synthetase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>8500742
MSDHNASEPDRKAEPGLDFIRALITADNANGRFDSRVHTRFPPEPNGYLHIGHAKSICLN
FGVAREFGGKCNLRFDDTNPLKESQEYVDSIREDVKWLGGDWQGREFYASDYFEQLYQYA
EQLILAGKAYVDSLSADEIREHRGTLTAPGKESPYRNRSVEENLDLFRRMRAGEFKDGEH
VLRAKIDMASPNVVMRDPTLYRIRHAHHHRTGDAWCIYPMYDYTHCISDSIEGITHSICT
LEFVNNRELYDWTLDTLGVYHPQQLEFARLNLTYTVLSKRKLIQLVEGGYVNGWDDPRMP
TISGLRRRGVTPEALQDFCARIGVAKADSVVDFSLLEFCMREHLNAVAPRVMGVLDPIKV
VIENYPDDQVETFDMPYHPEDTSHGSRTVPFSKVLYIERDDFREDPPKKYHRLAPGAEVR
LRYAYYITCREVVKDADGNITELRCTYDPATKGGWSQDGRKVKGTIHWVSAAHALHAEVR
LYEHLFSVENPNAAEEGKTFVDYLNPDSLKTVTAMLEPALADVAPGTRVQFERIGYFCAD
KDGTPGKPVFNRTVGLRDSWAKIEKKEGA