PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 8501039 (667 amino acids)

SeqID: 8501039 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597193: probable AMP-binding enzyme[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>8501039
MSQNKSDKIESMMDEKRLFAPPAAPSGDRRRPHVNGMDEYLAHRERADKDPEGFWGDRAR
QLLDWFTPWDKVMDADMNEPRIEWFKGATLNVAYNCLDRHLVNGRRNKAAIIWQGEPEDD
VRVLTYQMLYDEVCRFASVLQGLGVQKGDRVALYMPMIPELAVAMLACARIGAVHSIVFA
GFSAVSLQNRIQDCEAKVVVTADAVLRAGRSIPLKVNVDEALKDCPSVERVVVVDRAHSN
CAMREGRDMWWHEAMADRTLDTSCPCAKMDSEDMLFILYTSGSTGKPKGVVHTTGGYLAY
AAHTTQWVFDLHDDDVYWCTADIGWITGHSYIVYGPLALGGTTLMFEGVPSWPGPDRFWH
IVEKFRVNIFYTAPTVIRALMREGAHWTQKHDLSSLRVLGSVGEPINPEAWMWYHEHIGH
SRLPIVDTWWQTETGGIMISALPYATTLKPGSATMPLPGIDAAVVKADGTPCGPNEGGHL
VVRKPWPGMLRGVFGSPERYKSTYFERFPGMYESGDGARTDEDGYTWVMGRLDDVINVSG
HRMGTAEVESALVSHPAVAEAAVVGMPHAIKGEAIYAYVTLSAGTEETEELRAALRTWVR
KEIGPIATPEVIQFAEGLPKTRSGKIMRRILRKIASGAGSDFGDTSTLADPGVVQDLIEG
RVQLTGH

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory