PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 8501126 (461 amino acids)

SeqID: 8501126 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600548: glycolate oxidase subunit GlcD[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>8501126
MPSAALIKEFEAVVGKDNVFTSEADRQSYSYDSAVLEAVVPALVVRPTTTEQLGKVVRLC
NENGNPITVRGAGTNLSGGTIPDPREGIVILTNSLNRIIEINEEDLYAVVEPGVVTAKFA
AEVAKRGLFYPPDPGSQAVSTLGGNVAENAGGLRGLKYGVTKDYVMGIEFFDVNGGLVKT
GSRTVKCVTGYNLAGLMVASEGTLGVFSNIVLKLVPPPQASKAMMAVFDDVNKASEAVAG
IIAAHVVPCTLEFMDQATIRYVDDFTKAGLPRDAQAILLIEVDGHAGQVAEDAEKVEKVL
NKVGATEIKVAKDAAEKFKLWEARRNALPALARAKPTTVLEDATVPRSKIPAMVKAINDI
AAKYNISIGTFGHAGDGNLHPTILCDRRDKHEFERVEHAVDEIFDVALSLHGTLSGEHGI
GMAKSKWMEKETSKATIEFSRNMKRAIDPKYILNPGKIIGA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory