PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 8501132 (716 amino acids)

SeqID: 8501132 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 71159382: Anaerobic glycerol-3-phosphate dehydrogenase subunit C]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>8501132
MQTAKTLKEYRKELRESLDNEFLREAMDKFATAYPVSRANAFRGLDEKAMIAEVADAKDA
AAKNMDALYAQFKAEAKKRGVKVHMAKDAAEANEIIARIAKNSNCKKIVKSKSMTAEETL
LNHRLEEDGLEVIETDLGEWIIQLRHEGPTHMVMPAIHLSRYQVADLFSEVTKQKQEVDI
QRLVKVARRELRQHFATADMGISGANFAIAESGTIGLVTNEGNARLVTTLPRVHVALCGL
DKLTPSLNDALKSLRVLPRNATGQAITSYVTWITGANECKAAADEKKEMHIVFLDNGRRA
LAQDPLFSQVMRCVRCGACANVCPVYRLVGGHKMGHIYIGAIGLILTYFFHGKDKARNLV
QNCINCESCKSICAGGIDLPRLIKEIRARLSEEDGAPVEATLLGKVLKNRKLFHTLLRFG
KFAQKPVTGGTPYLRHLPQMFMKDHGFRALPAIADKAFRDEWETIRPRVSNAKLRVALFS
GCVQDFVYPEQMKAAVKVLASRGVEMDFPMDQSCCGLPVQMMAERQATIDVARQNVMAFD
AAKYDYILTLCASCASHLKEGYPNILAGQTDMTGKVKLFASKVIDFSSFVHDVLGMTADD
FKGKGEKVAYHSSCHLCRGLGVVEQPRALIASSGSEYCPAQEEAVCCGFGGTFSMKFPEL
SKELLDKKLNNAEATGATRMVADCPGCIMQIRGGAEKRGSRMKVGHIAELLAENLK

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory