PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 8501200 (580 amino acids)

SeqID: 8501200 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 39932465: Sulfoacetaldehyde acetyltransferase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>8501200
MPKMTPSEAMAEVLVQEGVTHVSGILGSAFMDLLDLFPAAGIDFISVRHEQTAGHMEDAF
TRMTGRAGVCIGQNGPGITNYVTAVATANMAHTPMVVLSPSAGSISVGWDGFQECDTWNL
FKPITKASLRVPHPKRAADILRTAFRIAYAERGPVLVDIPRDYFYGELDEDILAPSQYRV
APGGIGNPEQFREAVEVLKAAKRPVIVSGRGVVDSGALETVKALAEHLNAPVACTYLHND
AFPCDHPLWTGPIGYMGSKAAMRILQQADVILAVGTRLSYFGTLPQYDINYFPKTAKIVQ
IDINPRHIAKTHPVAVGLCADAKDAAVELLARVREAMPNPRRDDAVYAMVKAELEDWYKE
IAAIADEPVMEGRMHPRKALDVVGRFVTEHNAIATTDIGNTSSTANSYLRFRNAKRSVAT
LTFGNTGFAYQAGLGAQLACPEDTVVAIVGDGAWGMSLFEVPTAVQYNLPVIATVYNNGA
WCAEKKNQVDFYNNRFVGADIWSNSYAAIAEAMGATGYKVNTQADLADALDAARKSRKPS
VIEIMTDGTRLAPPFRRDALALPTRHLPKYDHLDKRHFVK

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory