PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 8501587 (1078 amino acids)

SeqID: 8501587 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            OuterMembrane                 [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599950: carbamoyl phosphate synthase large subunit [Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            7.80
    CytoplasmicMembrane    0.85
    Extracellular          0.69
    OuterMembrane          0.66
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            7.80

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>8501587
MPKRTDLKRIMVIGSGPIVIGQACEFDYSGTQAVKALKEEGYEVVLVNSNPATIMTDPGL
ADRTYIEPIEPETVAAIIRKERPDALLPTLGGQTGLNTALALAAMGVLEECGVDLIGANK
QVIEKAESRELFREAMANIGLKVPASGIARTMEDVRRLGTEMPFPLIIRPAFTMGGTGGG
IAYNMEDLEEIAARGLAASIKHEVMIEQSVLGWKEFEMEVMRDKADNCVIICSIENFDPM
GVHTGDSITVAPAQTLTDVEYQMMRDASIAIMREIGVETGGSNVQFGINPQNGDMVVIEM
NPRVSRSSALASKATGFPIAKIAAKLAVGYTLDEIPNDITRETMASFEPSIDYCVTKIPR
FTFEKFPGAKDELTTSMKSVGEAMSIGRTFKESLQKGLRSLEVGAPGLGSAFRCKGPERE
DIMRKLRTPNSRRIFYVRHAMLDGMTVEEIHEATAIDPWFLRQMKDLVDMEAELRDFALG
NAMTVDNAELVALMRRAKEYGFSDRQLAEMWKRPESDVRTLRKQMGIAPTYYLVDTCASE
FEAYTPYYYSTYETGHEVAVEDRKKVIILGGGPNRIGQGIEFDYCCCHASFALKEMGVQA
IMVNSNPETVSTDYDTSDRLYFEPLTFEDVMNIIETEKPDGVVVQFGGQTPLNLAVPLMR
AGVPILGTSPDSIDRAEDRERFQALLQKLGLRQPANATVMSLPEARSAAARIGYPTVVRP
SYVLGGRAMEIVYDEEQLAEYFANSVGEKPKHPILIDKFLESAIEVDVDALSDGTDVYVA
GIMEHIEEAGIHSGDSACVIPPHTLPEAIVNEIARQTVELARELRVVGLMNIQFAVKDGL
IYILEVNPRASRTAPFVSKATAVPLPRLATQIMLGATLKELDPWSMRRTGYFSVKESVFP
FNRFPGVDILLGPEMRSTGEVMGIASSFEEAYLKGQLAGGQRLPQSGKIFISVNDRDKLL
ITEVASMFADLGFEVLATSGTAKLLREGGVPATSVHKVYEGRPNIVDFIKNGDIALVLNT
ASGKRTVQDSKSIRQATLMYGVPYSTTVSGAKAIAQAIRASRCCGVNVKSLQEYYGTN