PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 8501869 (846 amino acids)

SeqID: 8501869 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 1172699: Phosphoenolpyruvate-protein phosphotransferase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>8501869
MVGIVVVTHSAVLGQGVKELVEQMTQGRVPLAVAGGIDDPEHPIGTDPMRVMAAIEEVQQ
GDGVLVLMDLGSALMSAETALDLLPPEVAAQVRLRPAPLVEGVMAAAVQASIGADLDTVL
REAQSALAAKAELLGMALPQDGGGVDEAAPPAAGATPAASHELTLMVPNRLGLHARPAAR
IVTALGPFVADVQLARGERVVSARSVNRIATLAVRGGETITFRAAGTDAEQALKALADLA
AENFGDLPDATKSSGRTGVEGPEGPGEQGRAGVAGVPAAKGGVPASPGIAVGPAVWHRPA
FDAPPPDLAAGDPDSEAARLDGALDAARKELAALERRTAAMAGKQEAEIFVMHRLLLDDA
TIAGDARQRIAERREPAEAAWYAVIDQAAESFRQLPEGYMRERAADLVDVGARVLRLLTG
APPSGPRLERPSVLLAADLGPSDMAHLDPALVLGIVTAQGGATSHAAILARSMGIPAVAG
AGALAASVADGVTVALDGSTGEVWIAPAPDVLSTIESRRASWLAVRQAALAGAARPAVTV
DGRHMHVHANIGSPMDAAPALQNGAEGVGLFRTEFLFLDRVAAPDEEEQRAAYVAAAAAM
PGLPVVVRTLDIGGDKPVPYLGDFAAGEENPFLGLRGIRFCLARRELFLTQLRALLRAAA
EHPLRVMFPMVAHPGELAAAKALLEEARAALAAQGLPHGPVEVGIMVEVPAAVALADQLA
RESAFFSIGTNDLAQYVMAADRGNAAVADLSDALHPAVLRMVRDTVAAGKAAGIPVAMCG
ELAGNADAIPLLVGLGLDELSMNGPAIPRAKDVVRGCDMTACVRLAGRALELPDAAAVRR
LLRDGG

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory