PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 8502165 (474 amino acids)

SeqID: 8502165 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15595514: hypothetical protein[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>8502165
MSTQAPHLSATQERSLRDIFPGDSLLLTPEQTLIFATDAGRRMGTPLAVVRPTTEAQVVE
LLRLAQAERLPVYARGRASNQVGACVPDRPGIVVSLLHMNRILDIADDDFVAEVEPGVVT
SDLQRAVEARGLFYPPDPASIDISTIGGNVATCAGGMRALKYGVTREYVLGLTAVLPGGR
VLHTGGRCHKNVVGLDLTRLFVGSEGTLGIVTRITLKLLPLPQATATLLAGFGSMEAAMH
GVRRIFRAGILPVALEFLSPEVLDCVARRQTPPWPDSVRGALLIRLDGSRESLPLEVRRM
HDALHSPGNAAGATSGNEPPLWSAHGVGHDEEEPLWAMRRGISPSSYLVRPNKIGEDIAV
PRGRLLDALTGIRAIAQAHDLPILTYGHVGDGNIHVNIMYDGADPSETTRADAATVEVMR
LVRSMDGTLSGEHGVGMAKKEFLHLQLSPLETELMRQVKHAFDPLGIMNPDKAY