PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on 8502320 (308 amino acids)

SeqID: 8502320 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [9 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>8502320
MDMDTALLLSILAATVQSGTPILFATLGEMFTERSGVLNLGVEGMMIVGAFSGFLVTHIT
GNPWAGVLAAGLCGGGLSLLHGVVCLIFQGNQVVSGLALTILGLGLADFLGTPYVGITTT
GFQAFAVPVLADIPVLGAIFFRHDALVYLSYLLPPLFWLFMARTRPGLALRAAGEHPAAA
SAAGLSPVRIRWCGIFTGGFLAGIGGAYLSLAYTHLWTNNMTSGRGWIAVALVIFAFWRP
GRAVFGAYLFGGVMALQLRLQAMGANLPSSLMLMLPYALTVLVLLASSLRGGGRAAPAAL
GVNIEPEE