PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO353_00565 (916 amino acids)

SeqID: AO353_00565 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 54294577: aconitate hydratase [Legionella pneumophila str. Lens]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO353_00565
MPSLDSLKTLKTLKIDDKTYHYFSLPEAAKSLGDLDKLPMSLKVLLENLLRWEDEKTVTG
ADLKALAAWLKERRSDREIQYRPARVLMQDFTGVPAVVDLAAMRAAMAKAGGDPQRINPL
SPVDLVIDHSVMVDKFASSTAFTQNVDIEMQRNGERYAFLRWGQSAFDNFSVVPPGTGIC
HQVNLEYLGRTVWTKDEDDRTYAFPDTLVGTDSHTTMINGLGVLGWGVGGIEAEAAMLGQ
PVSMLIPEVIGFKLTGKLKEGITATDLVLTVTQMLRKKGVVGKFVEFYGDGLAELPLADR
ATIANMAPEYGATCGFFPVDEVTLEYLRLSGRPSAVVKLVEAYCKTQGLWRLPGQEPVFT
DSLALDMSSVEASLAGPKRPQDRVSLPNVAQAFTDFLGLQVKPARPTSKEEGRLESEGGG
GVAVGNADLVSEADYEYEGQTYRLKNGAVVIAAITSCTNTSNPSVMMAAGLVAKKAVEKG
LKRKPWVKSSLAPGSKVVTDYYKAAGLTQYLDELGFSLVGYGCTTCIGNSGPLLEPIEKA
IQSSDLAVASVLSGNRNFEGRVHPLVKTNWLASPPLVVAYALAGSVRMDISSEPLGEGKD
GKPVYLRDIWPSSKEIADAVAQVDTAMFHKEYAEVFAGDAQWQAIEVPQAATYVWQKDST
YIQHPPFFDDISGPLPVIQDISGARILALLGDSVTTDHISPAGNIKADSPAGRYLREQGV
EPRDFNSYGSRRGNHEVMMRGTFANIRIRNEMLGGEEGGNTLYIPTGEKLAIYDAAMRYQ
AAGTPLVVIAGQEYGTGSSRDWAAKGTNLLGVKAVIAESFERIHRSNLVGMGVLPLQFKL
DQNRKSLNLTGKETLDIQGLTGVELTPRMNLTLVITREDGSSEKVEVLCRIDTLNEVEYF
KAGGILHYVLRQLIAS

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory