PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO353_00885 (396 amino acids)

SeqID: AO353_00885 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15595990: hypothetical protein[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO353_00885
MVHVPQIKIPATYMRGGTSKGVFFSLQDLPESAQVPGPSRDALLLRVIGSPDPYEKQIDG
MGGATSSTSKTVIVSKSIKADHDVDYLFGQVSIDKPFVDWSGNCGNLSAAVGSFAISSGL
VEASRVPRNGIAVVRIWQANIGKTIIAHVPITDGAVQETGDFELDGVTFPAAEVQLEFMN
PAAEEEGAGGSMFPTGNLVDDLEVPGVGTLKVTMINAGIPTIFVNAEAIGYTGTELQGDI
NGDPKALAMFETIRAYGALRMGLIQNLEDAAKRQHTPKVAFVARPADYLASSGKPVAAGD
VDLLVRALSMGKLHHAMMGTAAVAIGTAAAIDGTLVNLAAGGIPRNAVRFGHPSGTLRVG
AEAQQVDGEWTVTKAIMSRSARVLMEGWVRVPGDSF