PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO353_00895 (375 amino acids)

SeqID: AO353_00895 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 3123196: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO353_00895
MAEAKVLSGAGLRGQVAGQTALSTVGQEGAGLTYRGYDVRELAAQAHFEEVAYMLLYGEL
PNKAQLAAYINKLSKLRDLPQALKEVLERIPADAHPMDVMRTGCSFLGNLEPEHDFSEQH
DKTDRLLAAFPAIMCYWYRFSHDGKRINCVTDEESIGGHFLHLLHDKKPSELHVKVMNVS
LILYAEHEFNASTFTARVCASTLSDLFSCVTAAIGSLRGPLHGGANEAAMEMIERFASPQ
EAIKGTLDMLARKDKIMGFGHAIYKDNDPRNEVIKGWSKKLSDEVGDTVLFPVSEAIDKT
MWEQKKLFPNADFYHASAYHFMGIPTKLFTPIFVCSRLTGWAAHVFEQRANNRIIRPSAE
YVGVEQRKFVPIEQR

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory