PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO353_01935 (426 amino acids)

SeqID: AO353_01935 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15596696: conserved hypothetical protein[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO353_01935
MSVDPQQFLRELFATAIDAAHPQQVLEAHLPKDRSGRVIVIGAGKAAAAMAQVVERCWQG
EVSGLVVTRYGHGAPCEKIEVVEAAHPVPDAAGLAVAKRVLELVSNLSADDRVIFLLSGG
GSALLALPAAGITLADKQAINKALLKSGATIGEMNCVRKHLSAIKGGRLGKACWPATVYT
YAISDVPGDLATVIASGPTVADPSTSAEALAILKRYAIEVPASVRSWLQSPESETVKPGD
PSLARNHFQLIARPQQSLEAAAVKARQAGFSPLILGDLEGESREVAKVHAGIARQVVLHA
QPLAAPCVILSGGETTVTVRGNGRGGRNAEFLLSLTDSLKGLPGVYALAGDTDGIDGSED
NAGAIMTPDSYARATALGLSASDELDNNNGYGYFAALDGLIVTEPTRTNVNDFRAILILE
SPEHDA