PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO353_02075 (361 amino acids)

SeqID: AO353_02075 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 2506180: Phosphoserine aminotransferase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO353_02075
VSKRAYNFCAGPAALPEAVLLRAQSELLDWHGKGLSVMEMSHRSDEFVSIATKAEQDLRD
LLNIPSNYKVLFLQGGASQQFAQIPLNLLPENGKADYIDTGIWSQKAIEEAQRYGHVNVA
ATAKPYDYFAIPGQNEWKLSQDAAYVHYAPNETIGGLEFQWIPETGDVPLVADMSSDILS
RPVDISRFGIIYAGAQKNIGPSGIVVNIVREDLLGRARSFCPTMLDYKVAADNGSMYNTP
PTLAWYLSGLVFEWLKEQGGVEAIGKLNEVKQRTLYNFIDASGLYSNPINKTDRSWMNVP
FRLADDRLDKPFLVGAEARGLLNLKGHRSVGGMRASIYNAVDINAVNALVAYMAEFEKEH
G

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory