PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO353_02295 (388 amino acids)

SeqID: AO353_02295 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 2632690: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO353_02295
MAFSERVSRLKSSLIREILAAAQRPEVMSFAGGLPAEAMLPKVEWADMPLAMGQYGMSEG
EPALREALAAEARALGVPCEASQVLVVSGSQQTLDLAAKLYIDKGTEIMLEAPTYLAALQ
IFQLFGADCLTVPLEADGPNLNELRARLEKHHPAFIYLIPTFQNPSAVRYSEAKRDAVAA
LLDEFGVTLIEDEPYRELTFDGGSATPIVSRLKKASWIYTGTVSKTLLPGLRVGYLIASP
DLFPHLLRLKQSADLHTNRVGQWQALQWIGSEKFRDHLSELRDFYRVRRDAFQLALETHF
CDLAEWNVPQGGLFFWLTLKQPLDTRTLLNEALAQDVAFMPGEPFFSEPDNNPGHLRLNF
SHIDPARLDEGLKRLAGVVRQAQAAQAA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory