PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO353_03500 (950 amino acids)

SeqID: AO353_03500 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597641: glycine cleavage system protein P2[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO353_03500
MTQVNLSTANEFIARHIGPRAGDEQAMLNSLGFDSLEALSASVIPDSIKGTSVLGLEDGL
SEAEALASIKAIAAKNQLFKTYIGQGYYNCHTPSPILRNLLENPAWYTAYTPYQPEISQG
RLEALLNFQTLISDLTGLPIANASLLDEATAAAEAMTFCKRLSKNKGSHAFFASIHSHPQ
TLDVLRTRAEPLGIDVVVGDERELTDVSAFFGALLQYPASNGDLFDYRELTERFHAVNAL
VAVAADLLALTVLTPPGEFGADVAIGSAQRFGVPLGFGGPHAAYFSTKDAFKRDMPGRLV
GVSVDRFGKPALRLAMQTREQHIRREKATSNICTAQVLLANIASMYAVYHGPKGLKQIAN
RIHHLTAILAKGLSALGLNVEQANFFDTLTLATGANTAALHDKARAQRINLRVIDGERLG
LSLDETTTQADIETLWSVLADGKALPDFAALAASVQSRIPAELVRQSPILSHPVFNRYHS
ETELMRYLRKLADKDLALDRTMIPLGSCTMKLNAASEMIPVTWAEFGALHPFAPPAQSAG
YQQLTDELEAMLCAATGYDAISLQPNAGSQGEYAGLLAIRAYHQSRGEERRDICLIPSSA
HGTNPATANMAGMRVVVTACDARGNVDIEDLRAKAIEHREHLAALMITYPSTHGVFEEGI
REICGIIHDNGGQVYIDGANMNAMVGLCAPGKFGGDVSHLNLHKTFCIPHGGGGPGVGPI
GVKSHLTPFLPGHAAMERKEGAVCAAPFGSASILPITWMYIRMMGGAGLKRASQLAILNA
NYISRRLEEHYPVLYTGSNGLVAHECILDLRPLKDSSGISVDDVAKRLIDFGFHAPTMSF
PVAGTLMIEPTESESKEELDRFCDAMICIREEIRAVENGTLDKDDNPLKNAPHTAAEIVG
EWTHPYSREQAVYPVASLIEGKYWPPVGRVDNVFGDRNLICACPSIESYA