PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO353_04255 (426 amino acids)

SeqID: AO353_04255 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Extracellular                 [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Extracellular                 [matched 3914947: Extracellular protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Extracellular          10.00
    Periplasmic            0.00
    OuterMembrane          0.00
    CytoplasmicMembrane    0.00
    Cytoplasmic            0.00
  Final Prediction:
    Extracellular          10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO353_04255
MKSNTEKLGQLPHQPSLWTRADALKVHADDPTTTQPLVSADFPVLSNEVFIWDTMPLRDI
DGNVASVDGWSVIFTLTADRHPNDPEYIDENGNYDIIRDWNDRHGRAKMYYWFSRTGKDW
QFGGRVMAQGVSPTTREWAGSPILLNDQGDVDLYYTAVTPGATIVKVRGRVVTTEHGVEM
VGFKKVTSLFEADGEIYQTETQNPYWGFRDPWPFRDPKDGKLYMLFEGNVAGERGSHKVG
EAEIGDVPPGYEDVGNSRFQTACVGIAVANDEDGDDWEMLPPLLTAVGVNDQTERPHFLF
QDGKYYLFTISHKFTYADGVTGPDGVYGFVADSLFGPYVPLNGSGLVLGNPSSQPFQTYS
HYVMPNGLVTSFIDTVPTKESDTGMQYRVGGTEAPTVGIKVKGQQTFVVAEYDYGYIPPM
IDVTLK