PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO353_04285 (280 amino acids)

SeqID: AO353_04285 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [5 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 84027947: Inner membrane ABC transporter permease protein ydcV]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO353_04285
MRSDAKKREPGIRGEQASLGLRIAAWGGLVFLHFPILIIFLYAFNTEDAAFSFPPQGFTL
KWFSVAFARPDVLGAIKLSAQIAAIATLIAMVLGTLASAALYRREFFGKQGISLMLILPI
ALPGIITGIALLATFKTLGIEPGMFTIIVGHATFCVVIVYNNVIARLRRTSYSLIEASMD
LGADGWQTFRYIVLPNLGSALLAGGMLAFALSFDEIIVTTFTAGHERTLPLWLLNQLSRP
RDVPVTNVVAMLVMLVTMLPILGAYYLTRGGESVAGSGGK

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory