PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO353_04920 (300 amino acids)

SeqID: AO353_04920 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 9789853: Haloalkane dehalogenase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            5.41
    Periplasmic            4.48
    CytoplasmicMembrane    0.06
    Extracellular          0.05
    OuterMembrane          0.00
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO353_04920
MPLSEIPLCVWRKRGQSFVFRGQTIRYWVAGQGEPLLLIHGFPTASWDWHYLWQPLTQRY
RVIACDMLGFGDSAKPLDHEYCLLEQADLQQALLDYLGVRQPVHLLAHDYGDSVAQELLA
RHNEARVEIGSCVFLNGGLFPETHQPVLMQKLLLSPLGWMIGRAFSRDGLVKSFRQIFGP
RTRPSESELDDFWSLIDNNRGTRIMHKLINYIPQRRIQRDRWVKAMQAGTVAMRVIDGEV
DPVSGAHMVERYRQLIPNPDTVLLHGIGHYPQIEAPIQVLKHYLAFRDQLDPPALKTACS