PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO353_05595 (445 amino acids)

SeqID: AO353_05595 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599943: phosphoglucosamine mutase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO353_05595
MTKKYFGTDGIRGRVGEYPITPEFMLKLGWAAGMAFRSKGACKVLVGKDTRISGYMFESA
LEAGLTSAGADVMLLGPMPTPAIAYLTRTFNAEAGIVISASHNPHDDNGIKFFSGQGTKL
PDDVELMIEELLDMPMTVVESSKIGKVSRINDASGRYIEFCKSSVPTGTNFSGLKIVIDC
AHGATYKVAPSVFRELGAQVTVLSAQPDGLNINHNCGSTHMGQLQAVVLAEHADLGIAFD
GDGDRVLMVDHTGAIVDGDELLFIIARDLHERGKLQGGVVGTLMSNLGLELALADLGIPF
VRANVGDRYVIAELLERNWLVGGENSGHVVCFSHTTTGDAIIAALQVLMSLKRRSEGLAQ
SRQALRKCPQVLINVRFGGGENPVEHATVKEVSERVTKAMAGRGRVLLRKSGTEPLVRVM
VEGEDETLVRGYAEELAKLVAEVSA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory