PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO353_05710 (484 amino acids)

SeqID: AO353_05710 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO353_05710
MSTSTLIPTVAVEEDFRTRAHEALGDKQLRNNFRSAMDSLMAKRAASFSDAFEREHLRAL
GNAIRARALSKLPDLLEQLEQNLTRNGVTVHWAETVDEANGIVLSIIRAHEARQVIKGKS
MVSEEMEMNHVLAEQGVECLESDMGEFIVQLDHEKPSHIIMPAIHKNAGQVASLFHDKLG
VEYTKDVDQLIQIGRKVLRQKFFEADIGVSGVNFAVAETGTLLLVENEGNGRMSTTVPPV
HIAVTGIEKVVENLRDVVPLLSLLTRSALGQPITTYVNMISGPRKAHELDGPQEVHLVLL
DNGRSQAFADSELRQTLNCIRCGACMNHCPVYTRIGGHAYGEVYPGPIGKIITPHLVGLA
KVPDHPSASSLCGACGEVCPVKIPIPALLRRLREENVKAPDSPHQVMRGQGSKYSRKERF
IWNAWAKLNSSPTLYRLFGFFATRLRALTPNNIGPWTQNHSAPKPAARSLHDMAREHLAK
QGDR