PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO353_05720 (936 amino acids)

SeqID: AO353_05720 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599966: probable ferredoxin[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO353_05720
MSLPAAFLRDAQQLIPQDRRFDDPLSTLAFGTDASFYRLIPKLVIRVESEDEVVALLKLA
QRDRVPVTFRAAGTSLSGQAISDSVLIVLGDNWNGREIRSQGTQIRLQPGVIGAQANAWL
APFGRKIGPDPASINACKIGGIVANNASGMCCGTAQNTYHTLAGIRLVLADGSRLDTEDA
TSVAAFRNSHSELLERLATLGRETRANSELAARIRHKYRLKNTTGLSLNALVDFDEPVDI
LSHLLVGSEGTLGFISAVTYDTVIEHPNKASALIVFPDVETCCNAVTVLKTQPVSAVELL
DRRSLRSVQDKPGMPAFVQQLSANACALLIESRAASTALLHEQLAQIMNSLAAFPVEKQV
DFTQDPAENAKLWAIRKDTFPAVGAVRKTGTTVIIEDVTFPVEQLAAGVNRLIELFDKHH
YDEAILFGHALEGNLHFVFTQGFNSPEEVARYQAFMDDVAQLVAVEFGGSLKAEHGTGRN
MAPFVELEWGSDAYQLMWQLKRLLDPNGILNPDVVLSEDPQIHLKHLKPLPAADEIVDKC
TECGFCEPVCPSKGLTLSPRQRIVIWRDIQAKKRSGVDTSALEEAYQYQGLDTCAATGLC
AQRCPVGINTGELVKKLRSHTATRTKTANWLEGNFATALQGARFTLHVANSARMLLGAPR
LTKISAALTKLSKGQIPQWTNAMPQPERAIRFSPTVTDERPRVVYLAACVSRVMGPAAGD
KEQMSLYDKTRGLLEKAGYQVVSPDNQDNLCCGQPFASKGYAEQAEHKRQELIGALLHAS
RGGLDPIYCDTSPCTLRLVQDLGDVRLDLYDPVRFIRTHLIDRLDFTPQEAPIAVHVTCS
TQHLGESQALIDLARRCSKNVVIPEGIHCCGFAGDKGFTTPELNAHSLRTLKDAVQHCSE
GISTSRTCEIGLSQHGGIDYHGLVYLVDRVTQAKTV

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory