PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO353_05960 (340 amino acids)

SeqID: AO353_05960 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600429: probable aromatic hydrocarbon reductase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO353_05960
MNHKVAFSFADGKTLFFPVQANEILLDAALRNGINIPLDCREGVCGTCQGRCESGDYSQD
YVDEEALSSLDLQQRKMLTCQTRVKSDAAFYFDFASSLCNAAGPEQLSGTVTHVRQVSTS
TAILHLDLGAATQPLDFLPGQYARLLIPGTMSKRSYSFANRPSSSNQLQFLIRLLPDGVM
SNYIRERCQVGDEIALEAPLGAFYLRHIARPLILVAGGTGLSALLGMLDEIVARGCEQPV
HLYYGVRDAADLCEGERFSAYAHRIPGFRYTPVVSDPSPGWEGKRGYIAEHFDACELRDA
AVDMYVCGPPPMVESIKRWLQDQTLENVQLYYEKFTDSNV

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory