PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO353_06035 (512 amino acids)

SeqID: AO353_06035 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [3 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 121397: Glutamine transport ATP-binding protein glnQ]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO353_06035
MQFDWTYFFSLFADSAFWQACVTVIELSALAWFIGMLLGFLLASAKLSTSVWLRLPATAY
IWFFRSIPLLVLVVFVYNLPQLFPMTGSVLSNPFYSGLFALVITEAAYMAEIHRGGLISV
AKGQKEAGRALGIGFLGLQRLIVIPQAFRISLPTLINEYITVVKLTSLISVISLTELLTV
GQRLYAQNFLVMETLGAVAVYYVFIVSVFGWFLQRLEHHLDLNQRKPQTLDETAVSRLKA
QSQPLTSTAGLPVNRGAVPVLQLEKIHKRYGNHEVLKGIDLTVGSGQVISIIGPSGSGKT
SLIRTINGLESIDQGEIMLFGESFIGSNDTPNSAKVRSGVRHIGMVFQNFNLFPHRCILD
NITLAPRFHGSAKPLSEQRAYALLDKVGLLAHAHKYPHQLSGGQQQRVAIARALAMEPKI
MLFDEPTSALDPELVGDVLNVIRDLAKEGMTMLIVTHEMDFAMSISDRVIFMENGNVQLD
ASPYAIRNKQTGERVRRFMGLTAQTEMLLAAE

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory