PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO353_06340 (549 amino acids)

SeqID: AO353_06340 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599167: probable acyl-CoA dehydrogenase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO353_06340
MNLHQFAETHEVTNQPPSLDGTNLYRIDLPLQEWARRFGAGWADARIDAYGALAGGPLME
AGFLANQNKPVFSSHDRYGHRIDLVEFHPAYHELMRTAVEHGLTSLPWTDPQSGAHVARA
AMSYLHSQAEAGSGCPLTMTFASVPALRLQPDIAKQWLPKILATEYDPRNVGMAHKAGVT
IGMAMTEKQGGTDVRANTTKAYPVGAAGPGRAYELVGHKWFCSAPMCDAFLTLAQTDKGL
TCFLLPRHRPDDTRNQFYIQRLKNKLGNCSNASSEVEFRGALAWMIGEEGRGVPTIIEMV
AMTRFDCMVGSSALMRQALTQASHHCAHRMVGGKLLSEQPLMQNVLADLALESEAALALS
LRMGRALDHLDDTQEAKFARLVTAVGKYWICKRAPAMINEAAECMGGAGYVEDSILPRLY
REAPVNSTWEGSGNVQCLDVLRALSKEPGVLDALFSELGDGYGDKRLAAHISQLQAAFKD
TDDIQYRARQLTEDIALGLQAKLLLEAGNAAVSDAFIASRLGTAGRVYGTLPRGLDVEAI
VARSTPQGF