PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO353_08065 (413 amino acids)

SeqID: AO353_08065 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 62288063: D-amino acid dehydrogenase small subunit]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO353_08065
MAQRVCIIGGGVIGLTTAYALVRDGFEVTVVEARDSLGSETSFANGGQLSYRYVAPLADA
GVPLQAIGWMLRGDSPLKLRMRFDPAQWRWMASFLGACRTSVNRQNAAHLLRLALLSQTT
LQGWREEDSLDGFNWRRNGKLVTFRQAASFEHARNSLVDPQQQQVLSPTESARLEPALAD
AAFVGAIYTPDEEVGDCHAFCQQLMKRLKASGLCEFRLGRAVTGIRHVDGAVSAIELADE
VLPVEQLVIAAGHRSPLLALPGVHLPLYPLKGYSLTVPIGAEHRAPDLSITDYDRKIVYA
RIGEQLRVAAMVDIVGFDPAPDPKRLALIKRQACDTFPNAGTYDAAVEWAGMRPATPSGV
PLLGATAYRNLWLNLGHGALGFTLACGSARVLSELIGQRNPSIDLQGFTHRAA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory