PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO353_09035 (415 amino acids)

SeqID: AO353_09035 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600470: diaminopimelate decarboxylase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO353_09035
MDAFNYRDGELFAEGVALSAIAERFGTPTYVYSRAHIEAQYLAFADALAGTPHLVCFAVK
ANSNLGVLNVLARLGAGFDIVSGGELERVLAAGGQPDKIVFSGVGKTREDMRRALEVGVH
CFNVESTDELERLQVVAAELGVRAPISLRVNPDVDAGTHPYISTGLKENKFGIAIADAED
VYVRAAQLPNLEVVGVDCHIGSQLTTLPPFLDALDRLLALIDRLGDCGIYLRHIDLGGGL
GVRYRDEEPPLAADYIKAVRERIDGRDLTLVFEPGRFIVANAGVLLTEVEYLKHTEHKDF
AIVDAAMNDLIRPALYQAWMDVTAVRPRATPARAYDIVGPICETGDFLAKDRQLALEEGD
LLAVHSAGAYGFVMSSNYNTRGRAAEVLVDGDQAIEVRRRETVAELFAGESLLPE

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory