PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO353_09980 (366 amino acids)

SeqID: AO353_09980 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 15596607: probable periplasmic spermidine/putrescine-binding protein[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Periplasmic            9.44
    Cytoplasmic            0.33
    Extracellular          0.11
    CytoplasmicMembrane    0.06
    OuterMembrane          0.06
  Final Prediction:
    Periplasmic            9.44

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO353_09980
MNQLKRFIIPALCTAVLSTAVHAEERTLRVYNWFDYITPKALEDFKAENTKVKLVYDIFD
TNEALEAKLLTGNSGYDVVVPSNVFLAKQIEAGVFQPLDRSKLPNWNHLDPKLMKLIEAN
DPGNKFAVPYMYGTILIGFNPDKVKAALGTNAPVDSWDLIFKEENISKLKQCGVALLDSP
SEILPLALQHLGLDPNSKKPDDYVKAEALLMKIRPYITYFHSSKYMADIANGDICVAVGY
SGSFSQAANRAKEAKNGVIVDMRLPKEGAPIWFDMLAIPKGAKDPEDAYTFMNYLLQPKV
IAPVSDFVGYPNPNKDATEMVDPAIRSNPNLYPTEAAMSTLYTLQPLPRDAERARTRAWT
KIKSGT

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory