PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO353_13990 (688 amino acids)

SeqID: AO353_13990 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [15 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 732104: Inner membrane protein yjiY]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO353_13990
MKNNNSLLRHLPWLVLAVVGACALGVVALRRGEAINALWIVVAAVAIYLVAYRYYSLFIA
NNVMQLNPLRATPAVVNNDGLDYVPTNKHILFGHHFAAIAGAGPLVGPVLAAQMGYLPGT
LWLIAGVVLAGAVQDFMVLFMSTRRNGRSLGDMVREEMGQIPGTIALFGCFLIMIIILAV
LALIVVKALAESPWGIFTVMATIPIAMFMGVYMRYIRPGRIGEISIVGVLLLLGSIWLGG
QIAADPVWAKAFSFTGIQITWMLIGYGFVAAVLPVWLILAPRDYLSTFLKIGTIVALAIG
ILITMPVLKMPALTQFIDGTGPVWKGGLFPFLFITIACGAVSGFHALIASGTTPKLLDNE
SNARYIGYGGMLMESFVAIMAMVAASVIEPGVYFAMNSPAAIVGGEVMQVAQTVSSWGFA
ITPEALQAVAKDIGETTVLARAGGAPTLAVGIAQILHSVLPGENTMAFWYHFAILFEALF
ILTAVDAGTRAGRFMLQDLLGSFVPALKRTESWTANLIATAGCVAMWGYLLYQGVIDPLG
GINTLWPLFGISNQMLAGIALMLGTVVLIKMKRQRYIWVTLLPAAWLLICTTTAGFIKLF
DANPAIGFLSLAKKYSDALANGQILAPAKDITQMQHVIYNAYTNATLTALFLFVVFSILF
YAIKVGISAWGSKERTDKESPFQAIPEA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory