PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO353_14015 (437 amino acids)

SeqID: AO353_14015 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [8 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 67462316: Aerobic C4-dicarboxylate transport protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO353_14015
MLRWCSRSIFLQVVLGLVLGIICGLTLPEYSAQLKPLGDGFIKLIKMLIGLIVFCVVVSG
ISGAGDLKKVGRIGLKSVIYFEVLTTIALVIGLVFAFSTGIGSGANIHLDQLSTADMGDI
AQRGQHMHTTTQFLMDLIPTSVIGAFADNNILQVLLFSVLFGSALNLVGEAASGISRLIN
ELSHVIFRIMGMIVRLAPIGVFGAIAFTTSKYGLDSLQHLGSLIGLFYLTCTVFVSLILG
LVMRLSGLRLLPFLKYLREELLIVLGTASSDAVLPQIMRKLEHLGIGSSTVGLVIPTGYS
FNLDGFSIYLTLAIVFIANATGTPLAMSDLLTILLVSLITSKGAHGIPGSALVILAATLT
AIPAIPVVGLVLVLAVDWFMGIGRALTNLIGNCVATVAIARWEKDIDVQRANKVLSGEQG
YTFQSRKSAPPAHQQEF