PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO353_15495 (433 amino acids)

SeqID: AO353_15495 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [11 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 77416590: Serine transporter]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO353_15495
MTDVRTPAADNPAVELPRSTATTSKGWSKHDTTWMLGLYGTAIGAGTLFLPINAGVGGFW
PLLVLALLAFPMTFFAHRGLTRFVLSGRSGDITEVVEEHFGIGAGKLITLLYFFAIFPIL
LVYSVALTNTLSSFMEHQLHIAPPPRSVLSLALILGLMAIVRCGQGVIVKCMSVLVYPFV
AALLLLGVSLIPNWNGAFFASASEGMPLPLFFKTLWLAIPVMVFSFNHSPIISAFAVDQK
QRYGTQAEPKSSGILAVAHSMMVLTVMFFCFSCVLALSPADLAAAKAQNISILSYLANHF
QTPVIAYAAPLIALVAITKSFLGHYIGASEGFQGLIVKSLRGRGRVMPTSWLNRVTALFM
ILSCWAVATFNPSILGMIETLGGPVIACLLFLMPMYAIRRVPSLRQYSGQASNVFVVLIG
LIALSAIIYSVMP

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory