PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO353_16290 (304 amino acids)

SeqID: AO353_16290 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 15596539: probable binding protein component of ABC transporter[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    Extracellular          0.11
    CytoplasmicMembrane    0.06
    OuterMembrane          0.06
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO353_16290
MRIVPHILGAAITAALISTPVFAAELTGTLKKIKESGTITLGHRDASIPFSYIADASGVP
VGYSHDIQLKIVEAIKKDLDMPNLKVKYNLVTSQTRIPLVQNGTVDVECGSTTNNTERQQ
QVDFSVGIFEIGTKLLSKKDSTYKDFADLKGKNVVTTAGTTSERILKSMNADKQMGMNVI
SAKDHGESFQMLESGRAVAFMMDDALLAGEMAKAKSPTDWAVTGTAQSYEIYGCMVRKGD
APFKKAVDDAIVATYKSGEINTIYGKWFTQPIPPKNLNLMFPMSDELKALISNPTDKAAE
EKKS

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory