PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO353_17225 (453 amino acids)

SeqID: AO353_17225 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598713: probable lyase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO353_17225
MQRPGNQLFDAYFTARNMREVFSDQGRVQAMLDFEAALARAEARVGLIPASAVAPIEAAC
RAEHYDFAALGEAIAIAGNSAIPLVKALGKQIAAHDQDAERYVHLGATSQDVMDTGLVLQ
VRQALHLIDSDLARLGEALAIQARHHVLTPLAGRTWLQHATPVTLGMKVAGWLGAVTRSR
QRLHALKPRLLVLQFGGASGTLAALGEQAMPIAEALAQELQLTLPEQPWHTQRDRLVEFG
AALGLIAGSLGKLGRDISLLMQTEAAEVFEPSAPGKGGSSTMPHKRNPVGAAVLIGAATR
VPGLLSTLFSAMPQEHERSLGLWHAEWETLPEICCLVSGALQQALLITEGLEVDAERMAQ
NLDLTQGLVLAEAVSIVLAQRIGRDKAHHLLELCCKRAVAEQRHLRAVLGDEPQVTAELS
SAELDQLMNPAHYLGQAQTWVERALAEHVALTA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory