PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO353_19655 (267 amino acids)

SeqID: AO353_19655 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 20137723: "2,5-diketo-D-gluconic acid reductase A"]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO353_19655
MSVPAFGLGTFRLQGQVVIDSVSTGLELGYRAIDTAQIYDNEADVGQAIAASGIAREELF
ITSKIWIANFAKDQLIASLKDSLRKLQTDYLDLTLIHWPSPENQVPVHEFMGALLEAKAL
GLTRQIGVSNFTVDLMQQAIDAVGADNIATNQIELHPYLQNRTVVEFAQSQGIQITSYMT
LAYGEVLKDPVIQQIAERHQATPAQVTLAWAMQQGYAVIPSSTQRANLDSNLAARELTLS
EADMTLIAGLERGQRLTSPKGIAPDWD