PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO353_19945 (588 amino acids)

SeqID: AO353_19945 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 416605: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO353_19945
MMHASIIRKTLTDLPVTPNWLDSVQAREGFSWQGEASALAGLPGGGLNLAYEAVDRHAEG
KHRRHTALRILDRNGGRCDISYARLSLLSNRFANVLKTLGVVPGERLFVLCGRGLELYLG
VLGGLKLGCVVSPLFCAFGPEPIETRLRLGEGSVLLTSETLYRHKVAAIRERLPALKHVL
LYDEEGGNTTPVEGTLSLHRLLANATDHFEIAHTTADSPALLHFTSGTTGTPKGVLHVHG
AVLTHRVTGKYALDLHPDDIYWCSADPGWVTGTSYGIIAPLLLGVTSVVEGREFDAERWY
RTLEKQQVTVWYTAPTAIRLLMKAGAELAHSHRFPCLRFIASVGEPLNPEAVWWGQEVLG
LPIHDNWWQTETGGIMIANTVAMTIKPGSMGKPLPGVEAAVVVRGAAGELDYLGDNEVGE
LALKQPWPAMFRTYLGQEERYRQCFVAGWYLSGDLVRRDADGYYWFIGRSDDVIKSAGHL
IGPFEVESSLMEHPAVAEAAVIGKPDPLLGETVKVFVSLKSGFTASQALHDELLGHGRKR
LGAVVAPKELEFVEALPHTRSGKLMRRLLKARELGLPEGDTSSLENPS

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory