PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO353_20355 (565 amino acids)

SeqID: AO353_20355 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 416605: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO353_20355
MDQHSAPPQHSYSRGSQDKALLAMTIGQAFDNTVAKYPQGDALVVRHQQLRYSWAQLAEA
VDLHARALLALGLQTGDRLGIWAPNCAQWCISQFASAKIGVILVNINPAYRSSELEYVLK
QSGCQWLVCAGSFKTSDYHAMLQGLAPELAEQSIGHLHSERLPDLRGVISLDAQPPSGFL
PWSQLADLGAGVPVEQLKARQNSLHFDQAVNIQYTSGTTGFPKGATLSHYNILNNGYMVG
ESLGLTANDRLVIPVPLYHCFGMVMGNLGCVTHGSTMIYPNDAFDPLLTLTTVAQEKATA
LYGVPTMFIAMLDQPRRAELDLSTLRTGIMAGATCPIEVMRRVISEMHMSEVQIAYGMTE
TSPVSLQTGPSDDLELRVTTVGRTQPQLESKIIDEAGNLVPRGTIGELCTRGYSVMLGYW
NNPQGTAEAIDQAGWMHTGDLATMNEEGYVCIAGRNKDMIIRGGENIYPRELEEFFFTHP
AVADVQIVGIPCEKYGEEIVAWIKFHPGHSVSEQELQAWCKERIAHFKTPRYFKFVEEFP
MTVTGKIQKFRMREISIEELARVRR

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory