PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO353_21000 (326 amino acids)

SeqID: AO353_21000 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 16131877: quinone oxidoreductase, NADPH-dependent [Escherichia coli K12]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO353_21000
MAKAVRFYETGGPDVLRYEEVDVGEPGPGQVRLRHVAVGLNYADTYFRNGTYPIPMPNGM
GVEASGVVQAIGEGVTNVQVGDRVTYTGFLNTLGAYSTERLIPAAPLIKLPETISFETAA
AMTMRGLTSSYLMRRIYDFKAGDSILLHAAAGGVGLIVSQWAKLLGLTVIGTVSTEVKGE
IARAHGCDHVINYSHEDVAQRVRELTDGVGVNVVFDSVGKNTFMGSLDSLKRRGLMVCVG
TASGPIPAFDPVLLAMKGSLFMTRPALADYIADPAEKAALAGELFDLVGSGRIKIEINQH
YALQDAVQAHRDLESRKTTGSSIFVI