PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO353_21860 (328 amino acids)

SeqID: AO353_21860 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 6174923: Oligopeptide transport ATP-binding protein oppD]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.99
    Cytoplasmic            0.01
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    9.99

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO353_21860
MSTPALHVEELSVIAHNGERDVTLVDRLSFDLAEGEILGLVGESGSGKTMACRALMRLLP
SPSLRVQGKAVQLAGKNLLQLDEAGMRAIRGRRLGMIFQNPSSHLDPLMRIGEQIGEGIR
LHQGASKREARAQAIEVLRQVGIPDPPRRVDSYAHEFSGGMRQRAMIAVALACNPQVLIA
DEPTTALDVTVQAQILRLLLDLRDQRGLSIILITHDLGVVAQTCDSIAVMYAGRLCEHGS
KHELLVRPRHPYTAGLIDCQPASSVGHAMLRTIAGQPPLLDALPSGCSFNPRCLQQGSQC
TMLLPDLQIMAEGQRVACHYPLTAAGQL

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory