PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO353_22820 (1633 amino acids)

SeqID: AO353_22820 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598264: NAD-dependent glutamate dehydrogenase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    8.46
    Cytoplasmic            1.33
    Periplasmic            0.21
    OuterMembrane          0.00
    Extracellular          0.00
  Final Prediction:
    CytoplasmicMembrane    8.46

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO353_22820
MAFFTAASKADFQQQLQAALAQHISEQSLPQVALFAEQFFGIISLDELTQRRLSDLAGCT
LSAWRLLERFDHAQPQVRVYNPDYERHGWQSTHTAVEVLHHDLPFLVDSVRTELNRRGYS
IHTLQTTVLSVRRGAKGELLEILPKGSQGEGILQESLMYLEIDRCAHTAELNVLSKELEQ
VLSEVRVAVADFEPMKAKVQELIEGIDKSKFAVDAEEKSEIKGFLEWLVGNHFTFLGYEE
FVVRDDKDGGHIEYDQSSFLGLTRLLRAGLTADDLRIEDYAVNYLREPTPLSFAKAAHPS
RVHRPAYPDYVSIRQIDANGKVIKECRFMGLYTSSVYGESVRVIPYIRRKVDVIEQRSGF
QSKAHLGKELAQVLEVLPRDDLFQTPVDELFSTVMSIVQIQERNKIRVFLRKDPYGRFCY
CLAYVPRDIYSTEVRQKIQQVLMDRLKASDCEFWTFFSESVLARVQLILRVDPKNRLDID
PLLLEKEVVQACRSWQDDYASLVVESFGEAQGTNVLSDFPKGFPAGYRERFAAHSAVVDM
QHLLSLSEKNPLVMSFYQPLGQVSGQRELHCKLYHADTPLALSDVLPILENLGLRVLGEF
PYRLRHSNGREFWIHDFAFTAAEGLELDIQQLNDTLQDAFVHIVRGDAENDAFNRLVLTA
GLPWRDVALLRAYARYLKQIRLGFDLGYIASTLNNHTDIARELTRLFKTRFYLARKLTSD
DLDDKQLRLEQAILSALDDVQVLNEDRILRRYLDLIKATLRTNFYQTDANGQNKSYFSFK
FNPHAIPELPKPVPKFEIFVYSPRVEGVHLRFGNVARGGLRWSDREEDFRTEVLGLVKAQ
QVKNSVIVPVGAKGGFLPRRLPLGGSRDEIAAEGIACYRIFISGLLDITDNLKDGALVPP
ANVVRHDDDDPYLVVAADKGTATFSDIANGIAIDYGFWLGDAFASGGSAGYDHKKMGITA
KGAWVGVQRHFRERGINVQEDSITVVGVGDMAGDVFGNGLLMSDKLQLVAAFNHLHIFID
PNPQPANSFAERQRLFDLPRSAWSDYDTSIMSEGGGIFSRSAKSIAISPQMKERFDIQAD
KLTPTELLNALLKAPVDLLWNGGIGTYVKASSESHADVGDKANDALRVNGNELRCKVVGE
GGNLGMTQLGRVEFGLNGGGSNTDFIDNAGGVDCSDHEVNIKILLNEVVQAGDMTEKQRN
QLLGSMTDEVGGLVLGNNYKQTQALSLAARRAYVRIAEYKRLMNDLEGRGKLDRAIEFLP
TEDQLNERVAAGHGLTRAELSVLISYSKIDLKEQLLNSLVPDDDYLTRDMETAFPPMLVS
KFSEAMRRHRLKREIVSTQIANDLVNHMGITFVQRLKESTGMSPANVAGAYVIVRDIFHL
PHWFRQIEALDYQVSADVQLELMDELMRLGRRATRWFLRSRRNEQNAARDVAHFGPHLAA
LGLKLDELLEGPTREGWQTRYQAYVAAGVPELLARMVAGTSHLYTLLPIIEAADVTGQNA
ADVAKAYFAVGSALDLTWYLQQISALPVENNWQALAREAFRDDIDWQQRAITISVLQMGN
GKQDVETRLALWMDQNQTMVERWRAMLVDIRAASGTDYAMYAVANRELLDLALSGQAVVP
VTATAIAELEPAA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory