Running PSORTb v3.0 on AO353_22820 (1633 amino acids)
SeqID: AO353_22820 Analysis Report: CMSVM- CytoplasmicMembrane [No details] CytoSVM- Unknown [No details] ECSVM- Unknown [No details] ModHMM- Unknown [No internal helices found] Motif- Unknown [No motifs found] OMPMotif- Unknown [No motifs found] OMSVM- Unknown [No details] PPSVM- Unknown [No details] Profile- Unknown [No matches to profiles found] SCL-BLAST- Cytoplasmic [matched 15598264: NAD-dependent glutamate dehydrogenase[Pseudomonas aeruginosa PAO1]] SCL-BLASTe- Unknown [No matches against database] Signal- Unknown [No signal peptide detected] Localization Scores: CytoplasmicMembrane 8.46 Cytoplasmic 1.33 Periplasmic 0.21 OuterMembrane 0.00 Extracellular 0.00 Final Prediction: CytoplasmicMembrane 8.46 -------------------------------------------------------------------------------
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in the ENIGMA genome browser
>AO353_22820 MAFFTAASKADFQQQLQAALAQHISEQSLPQVALFAEQFFGIISLDELTQRRLSDLAGCT LSAWRLLERFDHAQPQVRVYNPDYERHGWQSTHTAVEVLHHDLPFLVDSVRTELNRRGYS IHTLQTTVLSVRRGAKGELLEILPKGSQGEGILQESLMYLEIDRCAHTAELNVLSKELEQ VLSEVRVAVADFEPMKAKVQELIEGIDKSKFAVDAEEKSEIKGFLEWLVGNHFTFLGYEE FVVRDDKDGGHIEYDQSSFLGLTRLLRAGLTADDLRIEDYAVNYLREPTPLSFAKAAHPS RVHRPAYPDYVSIRQIDANGKVIKECRFMGLYTSSVYGESVRVIPYIRRKVDVIEQRSGF QSKAHLGKELAQVLEVLPRDDLFQTPVDELFSTVMSIVQIQERNKIRVFLRKDPYGRFCY CLAYVPRDIYSTEVRQKIQQVLMDRLKASDCEFWTFFSESVLARVQLILRVDPKNRLDID PLLLEKEVVQACRSWQDDYASLVVESFGEAQGTNVLSDFPKGFPAGYRERFAAHSAVVDM QHLLSLSEKNPLVMSFYQPLGQVSGQRELHCKLYHADTPLALSDVLPILENLGLRVLGEF PYRLRHSNGREFWIHDFAFTAAEGLELDIQQLNDTLQDAFVHIVRGDAENDAFNRLVLTA GLPWRDVALLRAYARYLKQIRLGFDLGYIASTLNNHTDIARELTRLFKTRFYLARKLTSD DLDDKQLRLEQAILSALDDVQVLNEDRILRRYLDLIKATLRTNFYQTDANGQNKSYFSFK FNPHAIPELPKPVPKFEIFVYSPRVEGVHLRFGNVARGGLRWSDREEDFRTEVLGLVKAQ QVKNSVIVPVGAKGGFLPRRLPLGGSRDEIAAEGIACYRIFISGLLDITDNLKDGALVPP ANVVRHDDDDPYLVVAADKGTATFSDIANGIAIDYGFWLGDAFASGGSAGYDHKKMGITA KGAWVGVQRHFRERGINVQEDSITVVGVGDMAGDVFGNGLLMSDKLQLVAAFNHLHIFID PNPQPANSFAERQRLFDLPRSAWSDYDTSIMSEGGGIFSRSAKSIAISPQMKERFDIQAD KLTPTELLNALLKAPVDLLWNGGIGTYVKASSESHADVGDKANDALRVNGNELRCKVVGE GGNLGMTQLGRVEFGLNGGGSNTDFIDNAGGVDCSDHEVNIKILLNEVVQAGDMTEKQRN QLLGSMTDEVGGLVLGNNYKQTQALSLAARRAYVRIAEYKRLMNDLEGRGKLDRAIEFLP TEDQLNERVAAGHGLTRAELSVLISYSKIDLKEQLLNSLVPDDDYLTRDMETAFPPMLVS KFSEAMRRHRLKREIVSTQIANDLVNHMGITFVQRLKESTGMSPANVAGAYVIVRDIFHL PHWFRQIEALDYQVSADVQLELMDELMRLGRRATRWFLRSRRNEQNAARDVAHFGPHLAA LGLKLDELLEGPTREGWQTRYQAYVAAGVPELLARMVAGTSHLYTLLPIIEAADVTGQNA ADVAKAYFAVGSALDLTWYLQQISALPVENNWQALAREAFRDDIDWQQRAITISVLQMGN GKQDVETRLALWMDQNQTMVERWRAMLVDIRAASGTDYAMYAVANRELLDLALSGQAVVP VTATAIAELEPAA
Lawrence Berkeley National Laboratory