PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO353_22940 (1113 amino acids)

SeqID: AO353_22940 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 17369096: "Oligo-1,6-glucosidase"]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO353_22940
MAKKPRSATFSNDPLWYKDAVIYQVHVKSYFDSNNDGIGDFPGLIAKLDYIAELGVNTIW
LLPFYPSPRRDDGYDIAEYRGVHRDYGTLTDAKRFIAEAHNRGLRVITELVINHTSDQHP
WFQRARKAKPGSAARDFYVWSDDDQKYDGTRIIFLDTEKSNWTWDPVAGQYFWHRFYSHQ
PDLNFDNPQVMKAVLSVMRYWLDLGIDGLRLDAIPYLIERDGTNNENLPETHAVLKQIRA
EIDAHYPDRMLLAEANQWPEDTQLYFGDVHGDNGDECHMAFHFPLMPRMYMALAQEDRFP
ITDILRQTPEIPANCQWAIFLRNHDELTLEMVTDKERDYLWNYYAADRRARINLGIRRRL
APLMERDRRRVELLNSLLLSMPGTPTLYYGDEIGMGDNIYLGDRDGVRTPMQWSIDRNGG
FSRADPASLVLPPIMDPLYGYLSVNVETQAGDPHSLLNWTRRMLAIRKQSKAFGRGSLKM
LSPSNRRILAYTREYTGDDGKHEIILCVANVSRSAQAAELDLSAFAGMVPVEMLGGNAFP
PIGQLNFLLTLAPYGFYWFVLAAENQMPSWHVEPAQSLPDFTTLVLKKRMEELLEAPSRT
ILEQSALPSWLHNRRWFAGKDSRIETVHIAYGVRFGDPLHPVLFSEIEVVNDGQTSRYQL
PFGFLAEDQVGAALPQQLALARVRRGRQVGLVTDAFSLDSFVRAVIQAMQAYTVLDASDG
EIRFEPSAGLADLNLQADCDVRYLSAEQSNSSAVIGGSVVLKLIRKVASGVHPELEMGAY
LTSAGFKHISPLLGSVIRRDRQGEDTLLMIAQGYLSNQGDAWEWTQNNLERAIRDELAEA
ISEQEQHYNALGELKDFAGMLGQRLGEMHQILAAPGDNPAFGSRVSTHKDQQALAKAIAA
QLEHALQLLKQHQARLSPEDQVLVVRLQEQKRAILRHIQELAAKAVGGLQMRVHGDLHLG
QVLVIKGDAYLIDFEGEPARPLHERRGKHSPYKDVSGVLRSFDYAAAMALDGQGVEVTAQ
TLAARQRVTERYLREATATFVQAYRQAAASLAHAWQDPAAEDAALALFCLEKAAYEVGYE
AENRPAWLPVPLHGLYGLLSGLKPFSYVSGEQS