PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO353_23135 (498 amino acids)

SeqID: AO353_23135 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15595944: probable aldehyde dehydrogenase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    8.46
    Cytoplasmic            1.33
    Periplasmic            0.21
    OuterMembrane          0.00
    Extracellular          0.00
  Final Prediction:
    CytoplasmicMembrane    8.46

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO353_23135
MTLEQTLPICIAGEWRLGRGERYATRYPATGEAVAWLNAASVEDVEDAVHGAHQAFLHSG
WAQRKPHERASVLYRIAELIRQRSEELAQLQRQDNGKPINETRALVASAAGTFQFFAAAC
ETLEETITPSRGDFVSMSVYEPMGVIAAITPWNSPIASEAQKVAPALAAGNAVVIKPAEI
TPLMALQLARICEDAGLPKGLLSVLPGKGSLLGDALTRHPLVKRVSFTGGTKTGKHIAHI
AADKMMPVSLELGGKSPTIVLDDADLDHAVAGVLYGIFSSSGEACIAGSRLFVARALYEP
FMARLVAAAAELRVGDPADERTQMGPLISAGHRESVERYVALGLAEGGRLLLGGQRPSGG
VYDQGYYYPPTILEGLNNSQQVCQEEIFGPVLVAMPFDDEAQLIEQANDSLYALAAGIWT
RDYKRAWALGRKIQAGTVWINTYKQFSISTPFGGWRDSGLGREKGRLGILQYMEQKSLYW
GMNEQPLAWAGVQQEVGL

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory