PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO353_23435 (722 amino acids)

SeqID: AO353_23435 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 118508: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.99
    Periplasmic            0.01
    Extracellular          0.01
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    9.99

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO353_23435
MNAKIETSRRDFLKSTAVLGAGLVVAFVIPGANRFAQAASTPDAVFAPNAFLRIAPDGSV
TILLGHSEMGQGIWTGLTMLIAEELDADWTKIRVEHAPASAADYGLPAFGGMQITGGSTS
TWMEFDRYRQAGAAARLMLIEAAAKRFNVAPSKIQTEPGVVIAGDQRATYGELANDAGQL
PVPDPASIKLKDAKDWKIIGKPTKRLDTPEKITGQAKFGMDVQFDGLLTAVVARPPVFGG
SVKSFDGAAALALPGVHKVVQVPTGIAVVADHYWAAKLGRDALKIDWDLGPNAGLDSDAL
LQNFRKLAAIPGTPASQAGDISAALSKAVKTIDVEYSVPYLAHAPMEPLNCTVKITPDKC
EIWTGTQFQTLDQMIAAKITGLKPEQVEIHTEFLGGGFGRRANPTSDFVSEAVQVAKAAV
APVKTVWSREDDIRGGYYRSAFLHHARIGLDAKGMPQAWQHVLVGQSIMDGTPFEATMVK
NGVDATSVEGVADSPYIKGLANHLVDLHSPKTGISVLWMRSVGHTHTAFVVESLIDELAT
AAGKDPVEYRRTLLKEHPRHLGVLNLAVEKANWKAPLPAGHALGVAVHESFGSYVAQVAE
VSQDNLKIRVHRVVCAVDCGVVVNPASIAAQMESGITFGLGFTLHSKLTFKDGKVVQSNY
HDFQVLRLNEMPVVEVHIVPSTEKPGGIGETGVPPTAPAVANAVFALTGQRLRELPLQLA
GV

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory