PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO353_23545 (337 amino acids)

SeqID: AO353_23545 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 124028636: Flavohemoprotein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO353_23545
MTHSIALNFEDGVTRFVDANPGETVADAAYRQGINIPLDCRDGACGTCKCFAEAGRYDLG
EEYIEDALSSDEAEKGFVLTCQMRALSDCVVRVPVSSDVCRTQKAHYSAAISQVRQLSDS
TIALSIKGEALSKLAFLPGQYVNLGIPGSEQTRAYSFSSLQRDGEVSFLIRNVPGGLMSS
FLTGIAKAGDSMSLAGPLGSFYLRDIQRPLLLLAGGTGLAPFTAMLEKIAEQGSEYPLHL
IYGVTNDFDLVELDRLQALAARIPNFSFSACVANPQSAHPLKGYVTQHIEPKHLNDGDVD
VYLCGPPPMVEAVSQFIREQGVSPKNFYYEKFAASAA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory