PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AO353_23560 (751 amino acids)

SeqID: AO353_23560 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 16131943: biodegradative arginine decarboxylase [Escherichia coli K12]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AO353_23560
MYKDLKFPVLIVHRDIKADTVAGDRVRGIATELSQEGFSVLSAVDYTEGRLVASTHHGLA
CMLIAAEGAGENIHLLQNMAELIRVARARAPNLPIFALGEQVTLENAPADAMSELNQLRG
ILYLFEDTVPFLARQVARAARSYLDGLLPPFFKALVQHTADSNYSWHTPGHGGGVAYHKS
PVGQAFHQFFGENTLRSDLSVSVPELGSLLDHTGPLAEAEARAARNFGADHTFFVINGTS
TANKIVWQAMVARDDLVLVDRNCHKSVLHSIIMTGAIPLYLCPERNELGIIGPIPLSEFS
RESIQAKIDASPLTKGRTPKVKLAVVTNSTYDGLCYNAELIKQTLGNSVEVLHFDEAWYA
YAAFHEFFAGRYGMGTSRTDDSPLVFTTHSTHKLLAAFSQASMIHVQDGGARQLDRDRFN
EAFMMHISTSPQYSIIASLDVASAMMEGPAGRSLLQEMFDEALSFRRALANLRQHIATDD
WWFSIWQPPLVEGIDKVTTSDWLLQPEADWHGFGDIAEDYVLLDPIKVTLVMPGLTAGGA
LSERGIPAAVVSKFLWERGLVVEKTGLYSFLVLFSMGITKGKWSTLLTELLEFKRSYDAN
VSLATCLPCVAQRDVARYQGMGLRDLCDQLHACYRSNATAKHLKRMYTVLPEIAMKPADA
YDQLVRGEVEAVSIDNLQGRIAAVMLVPYPPGIPLIMPGERFTESTRSIIDYLAFARTFN
SSFPGFVADVHGLQHEDEGNGRCYTVDCIKI

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory